Both antigens were heat inactivated at 96 °C for 15 min and used at a final concentration of 10 μg/mL and 5 μg/mL respectively, as determined by previous optimization studies. Staphylococcus enterotoxin B (SEB) (Sigma–Aldrich, St. Louis, MO) was used as a positive control at 0.5 μg/mL. Peripheral blood mononuclear see more cells (PBMC) were isolated from whole blood by density gradient centrifugation over Lymphoprep (Nycomed Pharma, Oslo, Norway), and immediately
cultured at 2 × 106 cells/mL in supplemented RPMI culture medium (Biowhittaker, Verviers, Belgium) (complete medium) as described before [22]. We optimized a flow cytometry-based assay for the detection of Bp-specific memory T cells present in low amounts, which involves a long in vitro stimulation with the Bp-antigens FHA and PT (see Supplemental Information for detailed information). Briefly, Panobinostat nmr PBMC were labeled with carboxyfluorescein succinimidyl ester (CFSE, Vybrant CFSDA-SE cell tracer kit, Invitrogen, Merelbeke, Belgium) as previously described
[27] and [28], resuspended at 2 × 106 cells/mL and cultured for 5 days in the presence of antigen. Brefeldin-A (Sigma–Aldrich, 10 μg/mL) was added for the last 4 h of incubation. Cells were then incubated for 15 min at room temperature in the presence of EDTA (2 mM), and washed with PBS. Dead cells were identified by using the Live/dead fixable Aqua dead cell stain kit (Invitrogen) and the PBMC were stained with the following anti-human monoclonal antibodies: CCR7 PE (clone FAB197P, R&D Systems, Abingdon, UK), CD45RA PE-Cy7 (clone L48) and CD4 APC-H7 (clone SK3, both from BD Biosciences, Mountain View, CA, USA). The cells were fixed and permeabilized using Lysing Solution 1 and Permeabilizing Solution 2 (BD Biosciences) according to the manufacturers’ instructions, and subsequently stained with the following anti-human monoclonal antibodies: IFN-γ APC (clone 25723.11),
CD3 V450 (clone UCHT1) (both from BD Biosciences) and TNF-α PerCP/Cy5.5 (clone MAb11, Biolegend, San Diego, CA). Cells were acquired on a FACSCanto flow cytometer (BD Biosciences), and the data Tau-protein kinase were analyzed using the FlowJo software (Tree Star, Ashland, OR). A median of 60,000 cells was acquired (interquartile range 39,000–82,000). A subject was considered responsive when his antigen-induced response was 2 times higher than the value obtained for the unstimulated cells from the same subject and higher than the median value obtained for the unstimulated cells of all subjects. Data were analyzed using the GraphPad Prism version 4.00 for Windows (Graphpad Software, San Diego, CA, www.graphpad.com) or the IBM SPSS statistics version 19 (Chicago, IL). We used non-parametric tests to compare independent data (Mann–Whitney) and paired samples (Wilcoxon signed rank test). SPICE (Mario Roederer, Vaccine Research Center, NIAID, NIH) was used to compare the phenotypic profiles of responding cells [29].