Mutant strains lacking

ripA entered host cells and escaped the phagosome, but were defective for intracellular growth [21]. The deletion mutants Lonafarnib had no apparent affect on F. tularensis growth with respect to doubling time or final density when propagated in Chamberlains chemically defined media or complex nutrient rich BHI. Thus, expression of ripA appeared to be required for adaptation and growth in the cytoplasmic environment of a host cell. The expression of a number of Francisella virulence factors required for phagosomal escape and intracellular replication are induced in the intracellular environment by a process involving the positive transcriptional regulators MglA and SspA [16, 22–24]. Data on whether MglA regulates ripA expression is contradictory. Microarray analysis of MglA regulated loci indicated that ripA expression was unaffected by MglA, [23], whereas results from a proteomics study suggested that RipA was repressed by MglA [25]. Given the ripA deletion mutant phenotype with respect to intracellular growth, that MglA and SspA regulate numerous genes required for intracellular growth and that there is a discrepancy between the microarray and proteomic results with respect to MglA affects on ripA expression, we applied multiple approaches to investigate environmental requirements for, and influences on,

F. tularensis ripA expression. Results Characterization of the ripA locus and transcriptional unit Prior to Enzalutamide clinical trial analyzing ripA expression patterns and regulation we sought to determine the context and extent of the ripA locus and transcript, respectively. The genome annotation suggests that the gene following ripA, FTL_1915, would be transcribed in the opposite orientation (Fig 1a). Preceding ripA are two genes,

FTL_1912 and FTL_1913 that PD184352 (CI-1040) are predicted to be transcribed in the same orientation, and thus could constitute a three gene operon. We tested this possibility by RT-PCR and Northern blot analysis. Figure 1 The ripA genomic region and transcript analysis. (a) Graphical representation of the F. tularensis LVS ripA genomic region. Primers utilized for RT-PCR are marked with arrows while the region complementary to the RNA probe used in the Northern analysis is demarcated by a solid line. (b) RT-PCR analysis of the expression of genes FTL_1912 (F12-R12), FTL_1913 (F13-R13), and ripA (Everolimus F14-R14) are shown in the upper image. Analysis for transcripts bridging FTL_1912 to FTL_1913 (F12-R13) and FTL_1913 to ripA (F13-R14) shown in lower image and compared to the intrageneic ripA amplicon (F14-R14). PCR of cDNA demarcated by a (+) and reverse transcriptase negative reactions to assess DNA contamination marked as (-). (c) Northern analysis to evaluate the transcript size of ripA containing RNA. Roche digoxigenin labeled RNA ladder is present in the left most lane followed by total RNA from F. tularensis LVS (wt) and F. tularensis LVS ripA:: Tn5.